rs49934824 SNP Detail

Summary

• ID
  rs49934824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76419809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCAGTGG GCTAAGGTGG
  GATGCCCGCT CTCCAGGTGG TGAACCGGCT GGGCCTGGAT TCGCTGGCAC CCTTCGACCC
  AAAGGAACGG ATCATCGAGT GAGGCCTCCT CATGTCTCCG CCCCAAATCC TCCACTCTGT
  TCCCTTCCTG CCCGTTCTTT ACTTGCTTTA TCTCTCTTCC CACATCTTCT ACTTCGTCCT
  Y
  ATCTTCACAT CTCTGGTCCC CATACCTCAA GTCCTCATGC CTGATGCCTG ATCCCTCCAC
  CCCACAGCCC CAAACCCGCA TGCTTCAGTC CCGCCCCTTT CTGCCTGTCT GCATCTCTTC
  TCTCCTGGCT CTTAGCTCGG GGCTCGGGGT AAGAGTGTCT GTCTCCCCTT CTTTAAGTCT
  CTCCCACTGG GTAGGTACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ
ss61289530	NES16898855	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ
rs49934824					SNP	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61289530	NES16898855	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76419809 () rs orientation: forward

Symbol	Name	Function Class
Ftcd	formiminotransferase cyclodeaminase	Intron
Tssr94193	transcription start site region 94193	93 bp downstream
Tssr94194	transcription start site region 94194	75 bp downstream