rs49934152 SNP Detail

Summary

• ID
  rs49934152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:71159856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAACCAA CTGGAGGAAG
  AGTCACAGTA AGCAGGCAGG AACCTTAAAA TGACCCTCCC CCTTCCCTAA ATCCTGTGGT
  TTGCAGAGTG CTCCCTAAGT GAGCACACGC GGGCATCAGC GCAGGAGGCG GTTGCACGAC
  AGTGTCCAGG GAGAACCCAA CGGCTGGCAA GCCCCCTCTG CAAACCGCCC TGGCGCAGCG
  Y
  TTTCCGGGAC CCGGCAGGGG ATGACTCAGC TGCTGCGCCC CGGTGCGGGA CTCATGTGGT
  GCGGGAGGGG GCCACGGAGG GCCCAGCCGC CGGTTGAGGG CCGCCTCGCT CTGGGTTTTT
  GGTGTTTGTG GCTGGGATTG GTGGCTCACA TCCGCCGGGG ACTCGGGAGA GGAGGGAGAA
  CAGACTCGGG GAGGAGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60272776	NES15767707	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49934152					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60272776	NES15767707	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71159856 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm36856	predicted gene, 36856			711 bp upstream
Gm56903	predicted gene, 56903			within coordinates
Gm56904	predicted gene, 56904			within coordinates
Rr405418	regulatory region 405418			308 bp downstream
Rr530336	regulatory region 530336			1803 bp distal
Rr530337	regulatory region 530337			1749 bp distal
Rr530338	regulatory region 530338			1164 bp distal
Rr530339	regulatory region 530339			637 bp distal
Rr530340	regulatory region 530340			94 bp distal
Rr530341	regulatory region 530341			within coordinates
Rr530342	regulatory region 530342			286 bp proximal
Rr530343	regulatory region 530343			917 bp proximal
Tgif1	TGFB-induced factor homeobox 1			Intron
				mRNA-UTR
Tssr145687	transcription start site region 145687			1497 bp downstream
Tssr145688	transcription start site region 145688			838 bp downstream
Tssr145689	transcription start site region 145689			430 bp downstream
Tssr145690	transcription start site region 145690			119 bp downstream
Tssr145691	transcription start site region 145691			91 bp downstream
Tssr145692	transcription start site region 145692			55 bp downstream
Tssr145693	transcription start site region 145693			139 bp upstream
Tssr145694	transcription start site region 145694			239 bp upstream
Tssr145695	transcription start site region 145695			882 bp upstream
Tssr149222	transcription start site region 149222			1793 bp upstream
Tssr149223	transcription start site region 149223			1774 bp upstream
Tssr149224	transcription start site region 149224			1743 bp upstream
Tssr149225	transcription start site region 149225			1645 bp upstream
Tssr149226	transcription start site region 149226			1629 bp upstream
Tssr149227	transcription start site region 149227			1218 bp upstream
Tssr149228	transcription start site region 149228			1123 bp upstream
Tssr149229	transcription start site region 149229			1087 bp upstream
Tssr149230	transcription start site region 149230			968 bp upstream
Tssr149231	transcription start site region 149231			600 bp upstream
Tssr149232	transcription start site region 149232			577 bp upstream
Tssr149233	transcription start site region 149233			53 bp upstream
Tssr149234	transcription start site region 149234			314 bp downstream
Tssr149235	transcription start site region 149235			611 bp downstream
Tssr149236	transcription start site region 149236			621 bp downstream
Tssr149237	transcription start site region 149237			690 bp downstream
Tssr149238	transcription start site region 149238			781 bp downstream