rs49933943 SNP Detail

Summary

• ID
  rs49933943
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:76803808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAT GGACCAGTAC GCTTGAGAAG
  W
  CGGAAGAAAG ATATTCTGTC ACCTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321573602	CHEV_5_77084986	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49933943					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:76803808 () rs orientation: forward

Symbol	Name	Function Class
A730089K16Rik	RIKEN cDNA A730089K16 gene	within coordinates
Cpgi15996	CpG island 15996	1342 bp proximal
Cracd	capping protein inhibiting regulator of actin	mRNA-UTR
Gm10430	predicted gene 10430	1722 bp upstream
Rr613608	regulatory region 613608	1879 bp proximal
Tssr46728	transcription start site region 46728	1688 bp upstream
Tssr46729	transcription start site region 46729	1712 bp upstream
Tssr46730	transcription start site region 46730	1766 bp upstream
Tssr46731	transcription start site region 46731	1792 bp upstream