rs49933412 SNP Detail

Summary

• ID
  rs49933412
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148216994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAAATGT TGCTCTGCCT
  GTTACCCAAG TGTGGGACTC TGTTCCTCCA GGTTCTTCCA AGAGTGACTC AGGAGAGGAC
  TAGGCTCCTA CCCCATCCAG ATTATGGTGA CGTGGGGCCT CGGTTTCCCT ATCTGTAAGA
  TGGGTCAGTT GATTGGCCAA AGCAGATCCA AATGTCCATC AGCAGATGAG AGTACAAACA
  M
  ACTGTGGTCC TTCAGGAGAA GGGGATGTTA ACTGGTCCTA AAAAGGAATT CAAGAACAGC
  AGAGAGGCCC AACATGTAAA AATGCGTGAT GCTAAGCCTG ACCACCTGCA TTCGAATCCC
  AAGGCCCACA TGTAAGGAAA GTAGTGACTC CCCCAAATTG CCCTTTGACC TTTATACACG
  TGCAATGATG CATGCCTCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147994046	ENSMUSSNP4628171	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49933412					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148216994 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15291	CpG island 15291			745 bp distal
Draxin	dorsal inhibitory axon guidance protein			1839 bp upstream
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr604596	regulatory region 604596			1850 bp distal
Rr604598	regulatory region 604598			1612 bp distal
Rr604599	regulatory region 604599			37 bp distal
Tssr1378	transcription start site region 1378			1674 bp downstream
Tssr40251	transcription start site region 40251			1765 bp downstream
Tssr40252	transcription start site region 40252			1707 bp downstream
Tssr40253	transcription start site region 40253			1642 bp downstream
Tssr44585	transcription start site region 44585			1888 bp upstream
Tssr44586	transcription start site region 44586			1865 bp upstream
Tssr44587	transcription start site region 44587			1831 bp upstream