rs49906740 SNP Detail

Summary

• ID
  rs49906740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87418325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA ATGCTCTCAA CTGCTGAGTC
  R
  TCGTTCTAGC CCCCGTTTTG TTCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135463167	ENSMUSSNP652593	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320833969	CHEV_3_87314940	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49906740					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87418325 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	within coordinates
Rr397761	regulatory region 397761	1389 bp upstream
Rr579504	regulatory region 579504	1580 bp distal
Rr579505	regulatory region 579505	1864 bp distal
Rr579506	regulatory region 579506	1834 bp distal
Rr579507	regulatory region 579507	1273 bp distal
Rr579508	regulatory region 579508	990 bp proximal
Rr579509	regulatory region 579509	1661 bp proximal
Tssr926	transcription start site region 926	1797 bp upstream
Tssr33941	transcription start site region 33941	1558 bp downstream
Tssr33942	transcription start site region 33942	1568 bp downstream
Tssr33943	transcription start site region 33943	1619 bp downstream