rs49894477 SNP Detail

Summary

• ID
  rs49894477
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43611449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGTGAAAT GAAATTCTCA CTTTTTAGAG AATGGAAAAT
  TCCTACTTTC GGGGCAATGC AAATGTGATG GGGAAGAGCA GTGGAAATAG ACATTCTTTT
  K
  AGTTTAAGCT GGAAGAAAAG ATGAGTGGAA TTATTGGGTT GTGGAAAGAC AGCAGTGGTA
  TGTGGGTTAG CTGTGTGACT GCTTAAAAAA AAAGTCACCG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	WSB/EiJ
ss63124839	NES17437517	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	WSB/EiJ
rs49894477					SNP	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63124839	NES17437517	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43611449 () rs orientation: forward

Symbol	Name	Function Class
Eif3j2	eukaryotic translation initiation factor 3, subunit J2	588 bp upstream
Gm54727	predicted gene, 54727	607 bp upstream
Gm58438	predicted gene, 58438	within coordinates
Rr537089	regulatory region 537089	316 bp distal
Tssr153167	transcription start site region 153167	583 bp upstream