rs49878901 SNP Detail

Summary

• ID
  rs49878901
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137850080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGCTCTCC TGAGATTCCC TCCCAAGCCA GAACTCAAGC
  CAAAGGGACT TTGACAACTG AACAAAGGGC TATTGCTACT GCGGTACAGA CCAACGCGTT
  A
  AAAAATAAAA AAAAATAAAA TAACATAAAA ATACCCTGAA GTAGGCATGT ATTGATTTTA
  GAGTTACCGA AAAGAAAGCT TAAAGACTAC GAGGGCCGT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135949210	ENSMUSSNP5346808	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49878901					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137850080 () rs orientation: forward

Symbol	Name	Function Class
C230076A16Rik	RIKEN cDNA C230076A16 gene	within coordinates
Cpgi13871	CpG island 13871	130 bp distal
Mttp	microsomal triglyceride transfer protein	901 bp upstream
Rr375797	regulatory region 375797	within coordinates
Rr398069	regulatory region 398069	610 bp upstream
Rr586084	regulatory region 586084	942 bp distal
Rr586085	regulatory region 586085	792 bp distal
Rr586086	regulatory region 586086	912 bp distal
Rr586087	regulatory region 586087	within coordinates
Rr586088	regulatory region 586088	776 bp proximal
Trmt10a	tRNA methyltransferase 10A	Intron
Tssr31944	transcription start site region 31944	842 bp downstream
Tssr31945	transcription start site region 31945	823 bp downstream
Tssr31946	transcription start site region 31946	476 bp downstream
Tssr31947	transcription start site region 31947	433 bp downstream
Tssr31948	transcription start site region 31948	400 bp downstream
Tssr31949	transcription start site region 31949	382 bp downstream
Tssr35880	transcription start site region 35880	923 bp upstream
Tssr35881	transcription start site region 35881	606 bp upstream
Tssr35882	transcription start site region 35882	587 bp upstream