rs49875890 SNP Detail

Summary

• ID
  rs49875890
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145652860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAGGCCAG TAGAGGGCAT CGGATCCCCT AGACCTGAAG
  TTACAAACAG TCTCGAGCTG TGAACCTTAC TCCCACCTAC TAGAGAAGCA GCTTGTGTTC
  S
  TAACCACTGA GCTGCATCTC CAGCCCCACC CCACCCCTCA GCCATAAAAC CTTTTTTCCA
  GTTTTGCATT GTTCTTTTAA CTATACAAGT AGGCTCTGT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147846545	ENSMUSSNP6159018	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49875890					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145652860 () rs orientation: forward

Symbol	Name	Function Class
Rin2	Ras and Rab interactor 2	Intron
Rr566581	regulatory region 566581	2 bp distal
Rr566582	regulatory region 566582	77 bp distal