rs49874161 SNP Detail

Summary

• ID
  rs49874161
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156816941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGAGTGA CGGAGCTAAA
  AATAAAACAT TCAGAGGCAC AGGAAGAAAA GCAGAAACGT GGTGCCAAAG CAGTCAAGGG
  AAAAAGGTTT ACGTTGTAGG GGAGAAAACT GGAATGATGG AAAGGAAGGG AGAGGCTGAG
  AACTGGAAAG GCTTCATCTT CTGGCAGGGA ACATTAATGG TGTCAAAACC TAGGAAGTTC
  Y
  GTGGCTTTAC TACAGCTGGG TCTGTGTTGA AGTCCATGAC CCATGTCACT CAAGACTTCT
  GTGATAACCC TGCCTTTGCT CCCACCCCAC CTCCCCCTAA AATAGTAGCA GCCTAAACAG
  GAAGCCATCA AAGAGAACTC TTAAAAACTG TGATAGGATG CTGAAGTGTC ACTCTGCACA
  GTAGATGGCT TCCAGTAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148088724	ENSMUSSNP3332982	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49874161					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156816941 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndrg3	N-myc downstream regulated gene 3			Intron
				Noncoding-Transcript-Variant
Rr568396	regulatory region 568396			1789 bp distal
Rr568397	regulatory region 568397			within coordinates
Rr568398	regulatory region 568398			1718 bp proximal