rs49857052 SNP Detail

Summary

• ID
  rs49857052
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167118486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATG TGTCTGTTTA AAACTACCAT
  K
  TGCTAGTCGG GCACGCCTTT AATCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60342764	NES15845016	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	T	G	G		T	T		G	T		G
ss146036355	ENSMUSSNP3250071	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							T
ss320089753	CHEV_1_169221048	CHEVERUD	SCREENING_POP	f	SNP												G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs49857052					SNP	G	G	G	G	G	T	G	G	T	T	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60342764	NES15845016	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167118486 () rs orientation: forward

Symbol	Name	Function Class
Gm57182	predicted gene, 57182	within coordinates
Mir6347	microRNA 6347	692 bp downstream
Rr422672	regulatory region 422672	455 bp distal
Rr422673	regulatory region 422673	1309 bp proximal