AACAGCCAAC TAAAAAGCAC TACATGAAAG CAAAGCAGCC CTGGGCCGAT GGATTTCTGT AACTATCTTC TTGTTATCAA TGGGCCCCAC AGAGACGGGC TAGGGATGAG GAAATACACA AAATTCAAGT GGTTTAAAAG CTCAAAAGGT TAAATAAGAT TTCGCTAAGC CCAAAAGCCA ATTCACTGAG AATGTTAAGA R TGTTCACTAT ACATCGACTT TGGGCCAAGC AACGGAGATG TCCACCGAGT GAGGCAGGAA ATAAAGAATA AAACCTGTAT GATGTGGAAG ACCCTTACAA AGCACGGTAA CTGAGTCCCT CAAACAAGGT TTTCACTGTC TCGGTACCAT CCTTCCTTCT ACAGTCCCGT GGGGGGTGGG GCCAGACTGT ACAGAGAAGC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | BALB/cByJ |
BTBR T<+> Itpr3 |
KK/HlJ |
MOLF/EiJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|
ss60421108 | NES15922968 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | G | G |
SNP Consensus Information | ||||||||||
SNP | Consensus Type | BALB/cByJ |
BTBR T<+> Itpr3 |
KK/HlJ |
MOLF/EiJ |
PWD/PhJ |
||||
rs49852406 | SNP | A | A | A | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss60421108 | NES15922968 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:79049989 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rapgef2 | Rap guanine nucleotide exchange factor (GEF) 2 | Intron | ||||||
mRNA-UTR | ||||||||
Noncoding-Transcript-Variant | ||||||||
Rr578466 | regulatory region 578466 | 1457 bp proximal | ||||||
Tssr33629 | transcription start site region 33629 | 1851 bp upstream | ||||||
Tssr33630 | transcription start site region 33630 | 282 bp downstream | ||||||
Tssr33631 | transcription start site region 33631 | 1724 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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