rs49852406 SNP Detail

Summary

• ID
  rs49852406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79049989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGCCAAC TAAAAAGCAC
  TACATGAAAG CAAAGCAGCC CTGGGCCGAT GGATTTCTGT AACTATCTTC TTGTTATCAA
  TGGGCCCCAC AGAGACGGGC TAGGGATGAG GAAATACACA AAATTCAAGT GGTTTAAAAG
  CTCAAAAGGT TAAATAAGAT TTCGCTAAGC CCAAAAGCCA ATTCACTGAG AATGTTAAGA
  R
  TGTTCACTAT ACATCGACTT TGGGCCAAGC AACGGAGATG TCCACCGAGT GAGGCAGGAA
  ATAAAGAATA AAACCTGTAT GATGTGGAAG ACCCTTACAA AGCACGGTAA CTGAGTCCCT
  CAAACAAGGT TTTCACTGTC TCGGTACCAT CCTTCCTTCT ACAGTCCCGT GGGGGGTGGG
  GCCAGACTGT ACAGAGAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss60421108	NES15922968	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs49852406					SNP	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60421108	NES15922968	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79049989 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr578466	regulatory region 578466			1457 bp proximal
Tssr33629	transcription start site region 33629			1851 bp upstream
Tssr33630	transcription start site region 33630			282 bp downstream
Tssr33631	transcription start site region 33631			1724 bp downstream