rs49851963 SNP Detail

Summary

• ID
  rs49851963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148214857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGC CGGGAGGCAA GGGGACACCA
  R
  GTGCGAAGTG AAGACAAGAG TTAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147993983	ENSMUSSNP2976496	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321417529	CHEV_4_147504509	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49851963					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148214857 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15291	CpG island 15291			within coordinates
Draxin	dorsal inhibitory axon guidance protein			Intron
Mad2l2	MAD2 mitotic arrest deficient-like 2			mRNA-UTR
				Noncoding-Transcript-Variant
Rr604596	regulatory region 604596			within coordinates
Rr604597	regulatory region 604597			292 bp distal
Rr604598	regulatory region 604598			288 bp proximal
Rr604599	regulatory region 604599			526 bp proximal
Tssr1378	transcription start site region 1378			433 bp upstream
Tssr40251	transcription start site region 40251			342 bp upstream
Tssr40252	transcription start site region 40252			375 bp upstream
Tssr40253	transcription start site region 40253			483 bp upstream
Tssr44585	transcription start site region 44585			238 bp downstream
Tssr44586	transcription start site region 44586			251 bp downstream
Tssr44587	transcription start site region 44587			278 bp downstream