rs49823902 SNP Detail

Summary

• ID
  rs49823902
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121084888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTGATAAA CTTAACTGCA GGGCTATGTC TTCCTCCCTT
  GCTACCTGAA GCCAAGGGGT TTCCAATCCT CCCAGGAATA TGACATAGCT TGAAGTGATC
  M
  GGATTCTGGT TATAGTTTGA GATCTGTGAA ACTGTCTAGA AAACATAAAT GTCAGGAAAG
  GGCGGATTTG AATGTTTTCC CCCTAAGAGT ATGCCTCTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135717666	ENSMUSSNP687326	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49823902					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121084888 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	534 bp upstream
Gm56787	predicted gene, 56787	within coordinates
Rr367543	regulatory region 367543	299 bp upstream
Rr375663	regulatory region 375663	962 bp downstream
Rr584038	regulatory region 584038	within coordinates
Rr584039	regulatory region 584039	384 bp proximal
Rr584040	regulatory region 584040	592 bp proximal
Tssr31434	transcription start site region 31434	486 bp upstream
Tssr31435	transcription start site region 31435	582 bp upstream
Tssr31436	transcription start site region 31436	612 bp upstream
Tssr35412	transcription start site region 35412	359 bp downstream