rs49805543 SNP Detail

Summary

• ID
  rs49805543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:120463254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTGCTTGG AGAATCCCTG ACTAGCACAC ACAAGGCCCT
  GGGTTCAATC CCCAGCACTA CATAAATTCA GGTGGGATGG CACATATCTG TAATCTCAGC
  Y
  CTGGAGAGGT AAACACAGGA GGATTATTGC ACGTTTAAGA CATGCCTGAG CTACATAGTG
  AGTTCTAAGC CAGCCTGGGC TACAGCGTGA GACCCTGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147344720	ENSMUSSNP56561	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321285800	CHEV_4_120278662	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49805543					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120463254 () rs orientation: forward

Symbol	Name	Function Class
D4Mit76	DNA segment, Chr 4, Massachusetts Institute of Technology 76	813 bp distal
Gm8439	predicted gene 8439	Intron
Gm12860	predicted gene 12860	within coordinates
Rr598831	regulatory region 598831	924 bp proximal