rs49801284 SNP Detail

Summary

• ID
  rs49801284
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28317959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG CCGAGGGGTT CTAGGCTGAG
  Y
  CCCTACCCCT ACAGCAGGGG CTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134712136	ENSMUSSNP3809664	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320690652	CHEV_3_28162732	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49801284					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28317959 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13025	CpG island 13025			within coordinates
Gm54170	predicted gene, 54170			within coordinates
Gm56802	predicted gene, 56802			within coordinates
Rr574555	regulatory region 574555			157 bp distal
Rr574556	regulatory region 574556			within coordinates
Rr574557	regulatory region 574557			395 bp proximal
Rr574558	regulatory region 574558			1418 bp proximal
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant
Tssr28643	transcription start site region 28643			596 bp downstream
Tssr28644	transcription start site region 28644			477 bp downstream
Tssr28645	transcription start site region 28645			424 bp downstream
Tssr28646	transcription start site region 28646			397 bp downstream
Tssr28647	transcription start site region 28647			382 bp downstream
Tssr28648	transcription start site region 28648			373 bp downstream
Tssr28649	transcription start site region 28649			233 bp downstream
Tssr32865	transcription start site region 32865			425 bp downstream
Tssr32866	transcription start site region 32866			1420 bp downstream