rs49796030 SNP Detail

Summary

• ID
  rs49796030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64644104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATCATAA AATGAAGAAG
  ACGTCACAGT TAGTACTGCA GAATCACAAA GCCTAAGAGA CTGGGGTGAG CAGGATCTTC
  AACAAGCCGA ACAACCTAGA AGAGATGGAC AGGTTCCTCA GAACGACAGC CTAACAGGAT
  GGAGCCACAG ACAGAGACTG ACGGATTAGT AACCAGTGTG GAGATGGAAG TATCTCCAGG
  R
  CCTCACCCCG GCTTCCCAAT GGTTCCCTGG TTCTTGTGAT CTCAACTGAC CTATTGTAGA
  TGCTATAGGT AAGGTTTATT ACAGAGTAAT TGGAAACACT CTCACAGAGT GAGACTAGAC
  AATGGCCAGA GAGACCATTA CAAGGAGCTA CACATTTAGT GTGACTCATA GCACTTTCTG
  AAGTCTCTGG GGGCAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61173191	NES16687532	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49796030					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61173191	NES16687532	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64644104 () rs orientation: forward

Symbol	Name	Function Class
Gm43838	predicted gene 43838	within coordinates
Gm73453	predicted gene, 73453	within coordinates
Rr367844	regulatory region 367844	1054 bp upstream
Rr612028	regulatory region 612028	78 bp proximal
Rr612029	regulatory region 612029	675 bp proximal
Rr612030	regulatory region 612030	833 bp proximal
Rr612031	regulatory region 612031	1112 bp proximal
Tssr46401	transcription start site region 46401	1091 bp upstream