rs49789118 SNP Detail

Summary

• ID
  rs49789118
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123178963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCGACA GGATCTCAAG
  AAAATAATCA AACTTCCTTC AAAACCAATA TCAAGAAAAG ATTAAGAACA TGCACTGCTC
  TTCCAAAGGA CCTGAGTTCA AGTCCCAAGC ACCCACACCA GGAGGCTCAC AACTACCTGT
  AGTTCCAGCT CCAGAAAGAT CCAACACCTC TGGCGCTGTG CTCACGTGCA CATATATATA
  Y
  ACACACAGAG AGACAAACCC CACATAATTT AAAATAAAAA CTAATCTTAA AAAAAATAAA
  GAATCTGAAG CTGACGCGGG AGAAAGGCAA GACATGAAAC ACTGCTTCAA CAGTGACGGT
  GAAATGTAAG GGCTAAAACT GCCACTTGCT CTTGTAGCAA CTACTAGCAC TGCACTCATC
  GACAATTCCC AAGTCTACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135764329	ENSMUSSNP6581908	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49789118					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123178963 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	412 bp proximal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	Intron
Rr397990	regulatory region 397990	438 bp upstream
Rr584510	regulatory region 584510	within coordinates
Rr584511	regulatory region 584511	607 bp proximal
Tssr35499	transcription start site region 35499	354 bp downstream
Tssr35500	transcription start site region 35500	611 bp downstream
Tssr35501	transcription start site region 35501	680 bp downstream