rs49775871 SNP Detail

Summary

• ID
  rs49775871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:71158600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGAGAGCA CCATCTCCAT
  CCCTCAGCTC TCAGCGGCCA CACTGGTTTC TCTTTTGGGG CCTTTCCTCC CCGGGCTAGC
  GAAGAGTGCA TTTAGTTTGT AAAGGATGGA GAGAGGTTTA AGGACATCTC CTCTGTCCAC
  CCCAGAGAAG AAAAGACACC CCCATCCTTG TTTTTGACAG CTGCCCCAAA CTTCACTGTC
  Y
  CTGCTCCAGC CGCCGGAGGC AGCAGCTTCT GATTCAAGGG GTGGGGCACC GAAGGAAAAG
  TATTCCAGAC AAGAATCAAC TTCTTCCAGA AGGCGCAGCT GCCATTGACA CGCGGGCGCG
  GCACAGCGCA CCCTCCTCCT CGTGGACTCT TCTGCCAACA GCGACAGTGG GGGTGGGGGG
  AGGCAGACAT AGTCACCGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60272781	NES15767697	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49775871					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60272781	NES15767697	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71158600 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm36856	predicted gene, 36856			1967 bp upstream
Gm56903	predicted gene, 56903			502 bp downstream
Gm56904	predicted gene, 56904			within coordinates
Rr405418	regulatory region 405418			647 bp upstream
Rr530335	regulatory region 530335			928 bp distal
Rr530336	regulatory region 530336			547 bp distal
Rr530337	regulatory region 530337			493 bp distal
Rr530338	regulatory region 530338			within coordinates
Rr530339	regulatory region 530339			119 bp proximal
Rr530340	regulatory region 530340			662 bp proximal
Rr530341	regulatory region 530341			1163 bp proximal
Rr530342	regulatory region 530342			1542 bp proximal
Tgif1	TGFB-induced factor homeobox 1			Intron
				mRNA-UTR
Tssr145685	transcription start site region 145685			1418 bp downstream
Tssr145686	transcription start site region 145686			885 bp downstream
Tssr145687	transcription start site region 145687			241 bp downstream
Tssr145688	transcription start site region 145688			410 bp upstream
Tssr145689	transcription start site region 145689			800 bp upstream
Tssr145690	transcription start site region 145690			1126 bp upstream
Tssr145691	transcription start site region 145691			1146 bp upstream
Tssr145692	transcription start site region 145692			1190 bp upstream
Tssr145693	transcription start site region 145693			1395 bp upstream
Tssr145694	transcription start site region 145694			1495 bp upstream
Tssr149220	transcription start site region 149220			1780 bp upstream
Tssr149221	transcription start site region 149221			1247 bp upstream
Tssr149222	transcription start site region 149222			537 bp upstream
Tssr149223	transcription start site region 149223			518 bp upstream
Tssr149224	transcription start site region 149224			487 bp upstream
Tssr149225	transcription start site region 149225			389 bp upstream
Tssr149226	transcription start site region 149226			373 bp upstream
Tssr149227	transcription start site region 149227			22 bp downstream
Tssr149228	transcription start site region 149228			105 bp downstream
Tssr149229	transcription start site region 149229			151 bp downstream
Tssr149230	transcription start site region 149230			281 bp downstream
Tssr149231	transcription start site region 149231			627 bp downstream
Tssr149232	transcription start site region 149232			670 bp downstream
Tssr149233	transcription start site region 149233			1190 bp downstream
Tssr149234	transcription start site region 149234			1570 bp downstream
Tssr149235	transcription start site region 149235			1867 bp downstream
Tssr149236	transcription start site region 149236			1877 bp downstream
Tssr149237	transcription start site region 149237			1946 bp downstream