rs49729006 SNP Detail

Summary

• ID
  rs49729006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144600002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGAACCT GAAACAGGGG
  CTTAACCCAG AAGACACAGA GTTGCTTTGT CTCTCCAACT GTACAGATGA ACGGAAAGAC
  AGACAGAAGC TCATCTTTTG GATATTGTTT GCCTACCACA CCAGGGCTCC ATGTACCTTT
  ATTCTCTTAC AATCTCTTCT TATTATTCTT CTTCTCGAAT CAACTAAGAG CCGTGCCTCT
  R
  GGTGGATGAA TCTATGGGAG GTGAGGGGGT TCCTGAGTTT CCAGAAAGGA TTAAATGAAA
  GAGAGATAGT GTCTTAGTTA GAGTTGTACT GCTGTGAACA GACACCATGA TCAAAGCAAC
  TCTTATGAGG ACAACATTTA ATTGGGGCTG GCTTACAGGT TCAGAGGTTC ACTACATTAT
  CATCAAGGCA GAAGCATGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147838936	ENSMUSSNP6774570	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49729006					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144600002 () rs orientation: forward

Symbol	Name	Function Class
Gm57096	predicted gene, 57096	within coordinates
Rr604241	regulatory region 604241	594 bp distal
Rr604242	regulatory region 604242	278 bp distal