rs49710614 SNP Detail

Summary

• ID
  rs49710614
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95764034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TATGGGTAGT CACCATATAG TAAGGGGATT TGTTGATGAC
  TTACAGTCTG CAGTCCAACT CCCAACAATG GTCAGCAGCA GCTATGAATG GAAGTACAAG
  K
  ATCTAGCAGT TGCTCAGTCC CACAAGGCAA ACGGGTGGAG AAGAAAGAGA GTAAATCTTC
  CTTCTTCCAA TGTCCTGATG TAGGTCTCCA GCAGAAAGTG T                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144814192	ENSMUSSNP1036016	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49710614					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95764034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13522	CpG island 13522	602 bp distal
Gm26594	predicted gene, 26594	within coordinates
Prpf3	pre-mRNA processing factor 3	837 bp upstream
Rr397843	regulatory region 397843	724 bp downstream
Rr581050	regulatory region 581050	980 bp distal
Rr581051	regulatory region 581051	746 bp distal
Rr581052	regulatory region 581052	178 bp distal
Rr581053	regulatory region 581053	1881 bp proximal
Tssr34550	transcription start site region 34550	900 bp upstream
Tssr34551	transcription start site region 34551	833 bp upstream