rs49704331 SNP Detail

Summary

• ID
  rs49704331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120806333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAGGCTTG AGCCACTAAG CTTGGCTTAT TTTAAAGGTT
  TGTATTGTGA ATTGTTTCTA GTATCTTTAT TTTCCTTTTA CAGTTAAATT TTTTTAACAT
  Y
  TTATTTTTAA GGGCTGAAGA AGTGCCTCAG TGGTTAAGAG TACTTGTGGC TCTTACAGAG
  GATTGAGATT CCGCTCTCAG CACTTACATA GTCCTTCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147374574	ENSMUSSNP3583597	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320480948	CHEV_2_120801588	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49704331					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120806333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12148	CpG island 12148	1090 bp proximal
Gm55820	predicted gene, 55820	1799 bp downstream
Rr563749	regulatory region 563749	129 bp proximal
Rr563750	regulatory region 563750	352 bp proximal
Rr563751	regulatory region 563751	663 bp proximal
Rr563752	regulatory region 563752	675 bp proximal
Rr563753	regulatory region 563753	1185 bp proximal
Rr563754	regulatory region 563754	1191 bp proximal
Rr563755	regulatory region 563755	1257 bp proximal
Rr563756	regulatory region 563756	1639 bp proximal
Tmem62	transmembrane protein 62	1165 bp upstream
Tssr19722	transcription start site region 19722	1229 bp upstream
Tssr19723	transcription start site region 19723	1296 bp upstream
Tssr19724	transcription start site region 19724	1396 bp upstream