rs49683981 SNP Detail

Summary

• ID
  rs49683981
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172393231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCCTGGG GCACGGGTAA
  CCGGACTGTG GCGCGGAACG CGCTCTTGGC ACCTCCAAGC GACGCAGCGC GGGAACCTTC
  GCCAGAGGGC TCGAAGGATT CGTCCCCTCA GGTCTTAGAC CGATAGGCTC ACAACGAAGT
  CCGGGGAGCT CATTGTCCCC GGGGGCTCTC GGGCTCTGGG GCGGATCGAG ACGGGTGGTG
  C
  GAGCTTGGTG GGGCGCATAG GTGCCCCTCT CCTGGCTTGC TTGTTCGCTG TAGCAGGGTT
  TCGTACTAAC CGGGTCTCTC CTGTTTCTCT CCCAGGATCG CCACGACTCG AGCAGTAATG
  GCAACCCTCG CATCCCTCAC CTCTCCTCTC CGGGACAACA TCTCTACAGT CCCGCGCCGC
  CTCTCTCGCA CACCGGGGTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148318941	ENSMUSSNP3030911	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320619390	CHEV_2_172376811	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49683981					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172393231 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12825	CpG island 12825			within coordinates
Rr571697	regulatory region 571697			1708 bp distal
Rr571698	regulatory region 571698			310 bp distal
Rr571699	regulatory region 571699			682 bp distal
Tfap2c	transcription factor AP-2, gamma			Intron
				Noncoding-Transcript-Variant
Tssr21966	transcription start site region 21966			1706 bp downstream
Tssr21967	transcription start site region 21967			1662 bp downstream
Tssr21968	transcription start site region 21968			544 bp downstream
Tssr21969	transcription start site region 21969			268 bp downstream
Tssr21970	transcription start site region 21970			192 bp upstream
Tssr21971	transcription start site region 21971			211 bp upstream
Tssr27948	transcription start site region 27948			371 bp upstream