rs49674446 SNP Detail

Summary

• ID
  rs49674446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118605370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAA AAGCAAACAA ACCTTTGTAT
  Y
  CCAAAGAACA CTTTATATTT AAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147312516	ENSMUSSNP4682477	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320471737	CHEV_2_118600625	CHEVERUD	SCREENING_POP	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49674446					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118605370 () rs orientation: forward

Symbol	Name	Function Class
D2Mit444	DNA Segment, Chr 2, Massachusetts Institute of Technology 444	23 bp distal
Gm54146	predicted gene, 54146	290 bp upstream
Phgr1	proline/histidine/glycine-rich 1	Intron
Rr563335	regulatory region 563335	1660 bp distal
Rr563336	regulatory region 563336	within coordinates
Rr563337	regulatory region 563337	576 bp proximal
Rr563338	regulatory region 563338	1015 bp proximal