rs49626384 SNP Detail

Summary

• ID
  rs49626384
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:127703475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGATTA AGTAATGTGC
  CACCAAGCCT GGCGGAGAAA CAAACAAAAT GTTTCTTAAC TCAAAAAGCG ATAGTGTTTT
  GCTCATGTAA AATTTGCAGT TGGGGTGATT TATATTAGAA TAATTTAAGT ACTCAAAACA
  GAATAGTTTG TTTGGGCAAG TGTAGTCCTT GGGAAGGATA CATTTAATTG TGTAGGGTTC
  W
  TTGTTTCAAA TGGTATGAAT TGAGTCTTGC TTTGAAGTAA TACTTTAATT TCTCTTTATA
  ATTTGCCTTT TATTAGAATT TTTATAGTGT TATTCTGAAA GGCACATGTA GGACTAGGCC
  ATGTAAGGAC TTAATGTTCT TTGTGGATAG TTTGTGGAGT TTAGGCTCCC AATTGCTAAG
  GAAACAGTTT TAGAAAAGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60798944	NES16471890	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49626384					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60798944	NES16471890	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127703475 () rs orientation: forward

Symbol	Name	Function Class
2900009J06Rik	RIKEN cDNA 2900009J06 gene	1684 bp upstream
Ccnt2	cyclin T2	Intron
Cpgi690	CpG island 690	801 bp distal
Rr396250	regulatory region 396250	1596 bp downstream
Rr417683	regulatory region 417683	1884 bp distal
Rr417684	regulatory region 417684	1564 bp distal
Rr417685	regulatory region 417685	691 bp distal
Tssr8489	transcription start site region 8489	1500 bp downstream
Tssr8490	transcription start site region 8490	1466 bp downstream