rs49604030 SNP Detail

Summary

• ID
  rs49604030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41443781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGCACAG AAAGAAGTGT
  TTTCATTTTC ATAAAGAATG AAGCTCAGTT TGTCCCAGAA GCATTTCTGC TTGGTGTTTG
  GAGTGCGGAA TAGGAGTAGC TGGTTTGCTT GTTTGTTTGT TTGTTTGTTT CTCTTTGCAT
  TTTGGAACAG CAAGGACAAC CGCCACTCAC CTTTGCAGAA GGTATAATTG ACAGGCGTCA
  Y
  GCTCCGTACT TTTTGAAACT AAAATATATT ACTGACTCTT TTGCATAATG ATTTCCCATT
  AAATCTTCCT TTGAATACTT CTGGAAATGT CTTAGAAGGA CAATCTCACG TGCTCCAGAA
  CAAACGTCTT GTTCCATTTC TGTTTTTCCA CTTCAGGCTC CTTTATTTTG CCTGGGCTAC
  TGTTGACCCT CGTGGGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60397844	NES15901395	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49604030					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397844	NES15901395	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41443781 () rs orientation: forward

Symbol	Name	Function Class
Platr4	pluripotency associated transcript 4	within coordinates
Rr575951	regulatory region 575951	702 bp distal
Rr575952	regulatory region 575952	151 bp proximal