rs49590737 SNP Detail

Summary

• ID
  rs49590737
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:47056039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGCCAGC ATTCAGAAGG
  CAGAAGGAGG TGGATCTCTC TAAGTTTGAG GGAAGCCTGG TCTATAGAGC GAGTTTTAGA
  AAGGCCAGGC CTACAAGGAG AAACCCTGAC TTGAAAAATC TAAATCAATC AATTGATTGA
  TGGTTAATTA ATTTACTGTC TGTGGTCAGG GTTTACCAGC GCTTTATACA GGTCACTCAC
  W
  ATACAAAAGA AATAAATGAG CTAGAACGCT CTCTTTGGCA GCACATACAC TAAAATTGGA
  ATGATACAGA GATTAGCATG GTCCCTGCAC AAGGATGGCA CACAAAGCAA GGAACTAGAG
  ACGACTCTGA GGTCAAGGGC TTGCCACTCT TTCAGAGGAC CTGAGTTAGT TTCCAGTACT
  CCCATTCCCT GTGAATCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148981272	ENSMUSSNP5158726	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49590737					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47056039 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22960	predicted gene, 22960			28 bp upstream
Kif13a	kinesin family member 13A			Intron
				Noncoding-Transcript-Variant
Rr478995	regulatory region 478995			1386 bp distal
Rr478996	regulatory region 478996			200 bp proximal
Rr478997	regulatory region 478997			306 bp proximal