rs49590610 SNP Detail

Summary

• ID
  rs49590610
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16716316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTCCAC CTCCTGACTT
  CTCCCAGGAT CTGACTTCAG TTGGAAGGTT TCATGAGGGT CGACTCATAA CTGTAATTTC
  AGTTCCAGAG GATCCAATGT CCTCATCTGA CCTGCATGGC ATCAGGCATG CATGTGCTAC
  ACAGACATAC AAGCAGACAA AACACTCAGA CATAATATAT AAAAAGCATT TAAAAAGGAA
  M
  GATTTTTAAA AATAACTTTC CACCTGTGTA TGTATTTACA TGGCTCCACC TGTTCTTAGT
  TTATTCAGGA AGTATTAATG TTTGTTACTG TCTGTTACAA TCTGTTGATT TGAACATCAA
  TGCTCAGGCA GGAGTGTTTC CCAGCTGGTA GATGCTTTCC TGCCATGCTA GGAGCCTGGT
  TTCCATCCTC AGAGCTACAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148401845	ENSMUSSNP3906430	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49590610					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16716316 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	692 bp upstream
Rr642834	regulatory region 642834	1585 bp distal
Rr642835	regulatory region 642835	205 bp proximal
Tssr64666	transcription start site region 64666	674 bp upstream
Tssr64667	transcription start site region 64667	782 bp upstream