rs49565009 SNP Detail

Summary

• ID
  rs49565009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94235715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGATTTC CAATCTTACG
  TTGGAAAGGC AGCCTTACTG TATTTTTCTA GGGGTTCTGA CATTTTTAAA CTCTCAGTTG
  GAGGCTAATG AAAATTAACT TGGATCTTGA ACTTAATATC CATGAAAAAG AAATCCTTTA
  AATCGGGAGT TTGATATAAA TACACTCGAG GAAAGAGTAC ACTGGAAACA CAAAGTGTGG
  R
  CATTTTAAAA ATTTTGTTTA GGTTTGCTGC ATTGTGAAAT GTCTCATCTT AAATATAAAC
  CATGCGATGT GTTTCTACAG TTAATCAAAA GGATCAGTTT CTCTCTCTCG CCTTTGGTTA
  AAACATGAGT CAGTATGCTT AAATTGCAAG GGGTACACAC TTCACTTTTT AAATGGCTCC
  TGGACATTTC CTGATTGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146954223	ENSMUSSNP1362	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320397647	CHEV_2_94245527	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49565009					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94235715 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2810002D19Rik	RIKEN cDNA 2810002D19 gene			1337 bp upstream
Cpgi11962	CpG island 11962			644 bp proximal
Rr561373	regulatory region 561373			291 bp proximal
Rr561374	regulatory region 561374			762 bp proximal
Rr561375	regulatory region 561375			1107 bp proximal
Rr561376	regulatory region 561376			1299 bp proximal
Rr561377	regulatory region 561377			1332 bp proximal
Rr561378	regulatory region 561378			1386 bp proximal
Tssr19003	transcription start site region 19003			1349 bp upstream
Tssr19004	transcription start site region 19004			1393 bp upstream
Tssr25328	transcription start site region 25328			368 bp upstream
Tssr25329	transcription start site region 25329			1277 bp downstream
Ttc17	tetratricopeptide repeat domain 17			Intron
				mRNA-UTR