rs49550912 SNP Detail

Summary

• ID
  rs49550912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84247909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGCTCCC CGGACCATGC
  TGTAGCTGCC AGCTCCTTAA TCATCTGGAG ACAGCCGGCC GGCTCCCCTG GCCCCACCCC
  AGGCCAGGGC AGGCAAAGGC CAGGCCAGGC CAGGCGCAGG AAGCAGCCAC CACTGGGTCC
  TCAGCCACAG GCCAACCTGG TCCAGGACCT CCCTTTGGTT GGGCTCTTAA GGCATTCCTG
  Y
  TTGTAGCCTC AATGGCTCTC CATGGCCCAT GAGACAGAAC CTACATATGC TGTCCTGATG
  TGAATGGGCA AACCCAGCCC TCAGCTCATT CTGTGCCCTC ATGGCTCACC TGATCTCACA
  TGACAGCCAT GGTTCTCCGG GAACATTAAG CCCTCTCTCC TCTAACACCT CTGTGCTGGA
  GAAAGCCTGG GTAGATACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904617	NES15950348	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49550912					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904617	NES15950348	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84247909 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Gm67871	predicted gene, 67871	within coordinates
Rr633022	regulatory region 633022	1693 bp distal
Rr633023	regulatory region 633023	within coordinates
Rr633024	regulatory region 633024	211 bp proximal
Rr633025	regulatory region 633025	1687 bp proximal