rs49549408 SNP Detail

Summary

• ID
  rs49549408
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142326300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA CCCTCCTCCC ATGAGCAAAC
  C
  CCTCATTCCT GCAGTGCTGG TTGAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136016113	ENSMUSSNP6237138	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49549408					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142326300 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	124 bp upstream
Gbp2b	guanylate binding protein 2b	1360 bp downstream
Gm54185	predicted gene, 54185	1257 bp upstream
Rr398088	regulatory region 398088	356 bp downstream
Rr586457	regulatory region 586457	1563 bp distal
Rr586458	regulatory region 586458	within coordinates
Rr586459	regulatory region 586459	74 bp proximal
Tssr32225	transcription start site region 32225	1688 bp downstream
Tssr32226	transcription start site region 32226	1648 bp downstream
Tssr32227	transcription start site region 32227	57 bp upstream
Tssr32228	transcription start site region 32228	108 bp upstream
Tssr32229	transcription start site region 32229	147 bp upstream
Tssr32230	transcription start site region 32230	183 bp upstream
Tssr32231	transcription start site region 32231	200 bp upstream
Tssr32232	transcription start site region 32232	734 bp upstream
Tssr35947	transcription start site region 35947	1358 bp upstream