rs49545811 SNP Detail

Summary

• ID
  rs49545811
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121086393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCATTGCC TAACAGAAAA TGATGCAGTC AAGACACACA
  GTAAATTCGA GGTGTTTAAG GCAGCCTCTG CAGGAGACCA TACAGTTTTA CAGTAGCTTT
  W
  AAAAAAATAC ACACTAATAA AAATACACAA ACTAGTAATG TAGTTGTGTA TTATTGTTAT
  CAAATGTTAT GAACTGTATA TAGTAGTATA TATTGTACT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135717684	ENSMUSSNP5585475	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49545811					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121086393 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alg14	asparagine-linked glycosylation 14			Intron
				Noncoding-Transcript-Variant
Cpgi13756	CpG island 13756			455 bp distal
Gm56787	predicted gene, 56787			1071 bp upstream
Rr367543	regulatory region 367543			905 bp downstream
Rr584038	regulatory region 584038			1122 bp distal
Rr584039	regulatory region 584039			907 bp distal
Rr584040	regulatory region 584040			892 bp distal
Rr584041	regulatory region 584041			1532 bp proximal
Rr584042	regulatory region 584042			1652 bp proximal
Tssr31434	transcription start site region 31434			927 bp downstream
Tssr31435	transcription start site region 31435			912 bp downstream
Tssr31436	transcription start site region 31436			882 bp downstream
Tssr35412	transcription start site region 35412			1130 bp upstream