rs49544997 SNP Detail

Summary

• ID
  rs49544997
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3444958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTGATT TCTCTTGTAA
  GTTCCTTGGT GAATGCCCAG ACTTTCTCTG TTGGAGTGGC CCACGGCAAC TTTGTTGCAT
  AGCTGGGTGT AATTTGCATT CTTGTCACAC AGGAGCAATT TGGCCACTTG CACTGCTTAC
  CACCCCAGGC ACCCTGGCTG TGGTAAGCAG CTGAGTCTCC CTGTGTTTAT CTACTGCGAG
  W
  TTAACATAGT TCTGATTTAA CATAGTTCTG ATCTTGTAGA GGTCTCCTTC ATTTCTCCCG
  TCCTGGGTCA TGTTTCCATT TCTTTCAACT CCCTATGTGA CTTTTCAGCA ATTTTCACCT
  CCAGCTGCTT TAAATTCTTT AAAGCCCCAA ATCCTGTCGA AGACCCACCC CTCTTGTTTC
  TTTCTGTCTT GTTAAAGCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61077156	NES16044667	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	T	A	A	A	A		A	A	T	A
ss148543604	ENSMUSSNP5688073	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49544997					SNP	T	A	A	A	A	A	T	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61077156	NES16044667	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3444958 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef18	Rho/Rac guanine nucleotide exchange factor 18			Intron
				Noncoding-Transcript-Variant
Gm64114	predicted gene, 64114			281 bp downstream
Rr381632	regulatory region 381632			within coordinates
Rr658901	regulatory region 658901			1910 bp distal
Rr658902	regulatory region 658902			1998 bp distal
Rr658903	regulatory region 658903			1322 bp distal
Rr658904	regulatory region 658904			within coordinates
Tssr76040	transcription start site region 76040			1943 bp downstream
Tssr76041	transcription start site region 76041			1905 bp downstream