rs49542726 SNP Detail

Summary

• ID
  rs49542726
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109263161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAA TTCCCAGCAC CTACATGGCG
  G
  CTCACAATGT CTGTAACTCC AGCTC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321254089	CHEV_4_109078569	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49542726					SNP	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss147197554	ENSMUSSNP2947071	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109263161 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14573	CpG island 14573			571 bp proximal
Rr597311	regulatory region 597311			within coordinates
Rr597312	regulatory region 597312			860 bp distal
Rr597313	regulatory region 597313			259 bp proximal
Rr597314	regulatory region 597314			1157 bp proximal
Tssr38345	transcription start site region 38345			783 bp upstream
Tssr38346	transcription start site region 38346			1130 bp upstream
Tssr38347	transcription start site region 38347			1157 bp upstream
Tssr42761	transcription start site region 42761			281 bp downstream
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				Noncoding-Transcript-Variant
Ttc39aos1	Ttc39a opposite strand RNA 1			within coordinates