rs49540618 SNP Detail

Summary

• ID
  rs49540618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41442893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACAAAAT AAGACAAGTA
  AGATGGCTCA GTGCAGACAG GCCTTTGCTT CTAGGCCTGA CAACCTGCCT GATTTCCTAT
  CTCCAGAACC CACATAGCAG GAGAGACCAG ACTTCTGCAA GATGTCCTTT GTCCTTCTCC
  CTCCCCCAAT AGTAAATAGA TAGCTTTTAA AAGTAATACA CCTCGTTAAA AATTAATAAA
  Y
  CTAGCTGACA GGCATAAGAA GTTCATTGTA CTATGTAAGG TCTAGGGATT TTTCCTCTCA
  AATAAAACAC TTGTAAAATC TATATAAATA GAATACCCAA GAAGCCTGTT AGCAGACATC
  ATTTGGGGAA GGTCCCTCAT CTGTTTGTTT GGTTTTCACT TCCTCCTCCA TCTCAGCCCT
  CTCTGAACAC TTTAACAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60397845	NES15901401	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49540618					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397845	NES15901401	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41442893 () rs orientation: forward

Symbol	Name	Function Class
Platr4	pluripotency associated transcript 4	within coordinates
Rr575951	regulatory region 575951	within coordinates
Rr575952	regulatory region 575952	1039 bp proximal