rs49538686 SNP Detail

Summary

• ID
  rs49538686
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118605768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGACATA AAAGAGCTAG
  AACTCCCACC AAAGCCCACC TTTTGGGACA CCCAGTACCA CACAGATGGC TTCTGCAGAA
  GGAGCGGTTA TGTCCTCAGT GGGTATCGTC CCCGTGATGT GAATTCCTGC TGGACAGTAA
  GGCAGAGTGA AGTGAGAGAG ATCTCCAAGC AGCAGACAGC AAGGGCAGAG ACCCAGAGCC
  R
  AGACCAGAAG GTTGTAACCA GGATATAAGG AGAAGCCAGC ACAGAGCTCT GAGGGGCTAT
  AAGCAGATGT TCAGGAATGA ATGGGGGAGG CTGGCTGGGG CCCAGACAGA GACAGAAGAA
  GAGGAAGAAT TGGGGTTTAC CACAATAGCA TGTCTCCCAA GTGCCCTGAA ATTTGACCAA
  GGTTAGGAGG GCAGACCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147312541	ENSMUSSNP6305179	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49538686					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118605768 () rs orientation: forward

Symbol	Name	Function Class
D2Mit444	DNA Segment, Chr 2, Massachusetts Institute of Technology 444	421 bp distal
Gm54146	predicted gene, 54146	688 bp upstream
Phgr1	proline/histidine/glycine-rich 1	Intron
Rr563336	regulatory region 563336	361 bp distal
Rr563337	regulatory region 563337	178 bp proximal
Rr563338	regulatory region 563338	617 bp proximal