rs49525466 SNP Detail

Summary

• ID
  rs49525466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84246829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCCAGA CAGAAGGAGA
  TTCTGTCCTC TATAAATGAT CCATTCTCAT GCGTTCTGCA AGAGTAACAG AAAACAGAGC
  AAAACTCCTG AGCCCACACC CTGGAGATGG ACAGTGCCTA CTGAGAGGTC AGACCAGCGT
  CCCAACCGCT CCTCCCAGCC TGTCAGGCAG AGTACAATTA TTTGAATGCA GTCAGCAGCA
  R
  CAGTGACAAG GTGAACAGGA CTCTTGAGTC GGAGTCACAG GACCTCTGCT CATGACAAGC
  CTACAGATTC AAGACATTAA TCCATAAGAT CTGTCCAGCC ATCATGCTGG GCTGGCGCTA
  CAGGGACCCT CTTGTCTCTG CCTTAGAGCC AGAGCCTGGC AAATCATGTA GCCTCTGGGG
  ACTAAACTTG GGGCTCATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904626	NES15950358	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49525466					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904626	NES15950358	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84246829 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Gm67871	predicted gene, 67871	within coordinates
Rr633022	regulatory region 633022	613 bp distal
Rr633023	regulatory region 633023	705 bp proximal
Rr633024	regulatory region 633024	1291 bp proximal