rs49523836 SNP Detail

Summary

• ID
  rs49523836
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:16717328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAC TCGCAGGGGG CAGGCTGCAG
  M
  CGGCTGGGCT GGGCAGGGGT CCTCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148401923	ENSMUSSNP6949364	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49523836					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16717328 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	mRNA-UTR
Rr642835	regulatory region 642835	307 bp distal
Tssr64666	transcription start site region 64666	253 bp downstream
Tssr64667	transcription start site region 64667	220 bp downstream