rs49488420 SNP Detail

Summary

• ID
  rs49488420
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155871037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACACACAC ACACACACAT ATCCTCTTCC ACTATGGCTA
  GACAAGGCAG CCCAGTTAGG GGAACAGGAT CTACAGGCAG GGAACAGAGT CAGGTAAGCC
  T
  CAGCTCTGGT TGTCAGAGAA CTCCCATAAC AAACCACAAC CACCAGCAAC CAGCCAACAA
  CCCACCGCAC CTCTCAAGGC CCTAACATTT CTATACTCT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148115559	ENSMUSSNP1145922	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49488420					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155871037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15485	CpG island 15485	1828 bp distal
Rr606570	regulatory region 606570	1914 bp distal
Rr606571	regulatory region 606571	402 bp distal
Rr606572	regulatory region 606572	1841 bp proximal
Tmem278	transmembrane protein 278	706 bp upstream
Tssr44972	transcription start site region 44972	1647 bp upstream
Tssr44973	transcription start site region 44973	1626 bp upstream
Tssr44974	transcription start site region 44974	1562 bp upstream
Tssr44975	transcription start site region 44975	1541 bp upstream
Tssr44976	transcription start site region 44976	1528 bp upstream
Tssr44977	transcription start site region 44977	1506 bp upstream
Tssr44978	transcription start site region 44978	700 bp upstream
Tssr44979	transcription start site region 44979	660 bp upstream