rs49477781 SNP Detail

Summary

• ID
  rs49477781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:29418630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTGTC TACATTTCAG
  ATGTTATCCC TTTCTCAGTT TCCCCTCAGG AAGTCCCCAA ACCCCTCCCC CTACTACTCT
  GAGGGTCCTC ACCCACCCAC CTACCCTTTC CCGCCTCCCC GTGGCATCTC ATTTCTAATC
  TTTTGCAAAC CTGAAGTCAA CTTTTTTTAG TATGAAGAAC TTTACAGAGA TGGATCAAGT
  R
  CTTCCCTAGA TCTGTGTTAC TCATCTGAGG AAATAAGAAA TGTACACAAA ATAGATAACA
  CTGGCCCTCA AGGGGCCCAG AAGTCCAATG GGAGAGCAGA GGAGAGGTCA CTTTCAGCTC
  CTAGCACAGC AACACATAAA GTGCAGGAAG AGAAAAAAAG CAGCAGCTAT TCACAAAACT
  AAGCAAACAC GTAGGCCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61132462	NES16641040	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49477781					SNP	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61132462	NES16641040	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29418630 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Rnf32	ring finger protein 32			Intron
				Noncoding-Transcript-Variant
Rr46	regulatory region 46			557 bp distal
Rr366632	regulatory region 366632			828 bp downstream
Rr608827	regulatory region 608827			892 bp distal