rs49470672 SNP Detail

Summary

• ID
  rs49470672
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:64870658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAAATTT TCAAAGGATA
  AATTTAAGGT ATCATTCTTT TAAAAAGGAG ATGACTACCG TTGTAAACAA GTGTGGTAAG
  ACAAGTGAAT TAAAATACAA AGGAAAGAAG ACTGCATTTT GTTTTTATTT TCATATTTTG
  CTTGGAACTG AGATATAACC CATATTTTGC ATGGTCTATG TGGCTAACTC TTAACAAAGA
  R
  GACTAAGAGT TGGTGACTCT AAAGGTGTCT GGCAAGAACC CTTCACCGAG TACCTGAGCC
  CTAAGTACCC TGCTCTGCTC AATTAAGATT CCATCAGGTA TTGAGGGGAG TACCATCCTC
  CCTGGCAAAA GTGAATTGAG GTTAGAATAT AAAGATGTTT TTAAATATCA GCAGTATTAG
  CATCCCAAAC CAGATCTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135246306	ENSMUSSNP4551593	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49470672					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:64870658 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm54196	predicted gene, 54196			within coordinates
Kcnab1	potassium voltage-gated channel, shaker-related subfamily, beta member 1			Intron
				Noncoding-Transcript-Variant
Rr577647	regulatory region 577647			1224 bp proximal