rs49464065 SNP Detail

Summary

• ID
  rs49464065
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67659100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATAAAAA AGCAAAGGAG
  AATCAATCAT ACCGTGGAAA GAAGGGCAAA GAAATCCACA GACGGGTGGA CGGGACACCA
  CACACACACA CACACACACA CACACACACA CCCTCCAACC CCCACCCCCA GCCATCCTCA
  AGCTTCAGGC TCCTAATGGT CTGGCCAATC ACTGCTGTCT GAGATCCAAG CTTTCTGGTG
  S
  GTCATCTGAG AAGTTGTAAA TCTTACTCAA GAGGACAGTT CTTTGTCAAG CTGAAATGTC
  TTCCTGGCTT CCTCTCAGCT TTTTCTTTCT CCCAGCATGA GAGATTCTTG GGTAATTTGT
  AATTTCTTTG GGGCTATTGT TTCAATAGTC TGACATCCAA AAGGGCAGGC ACAAGTATCT
  TTAAAGTATC CTCTTCCTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss60893877	NES15948093	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs49464065					SNP	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60893877	NES15948093	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67659100 () rs orientation: forward

Symbol	Name	Function Class
Igk	immunoglobulin kappa chain complex	within coordinates
Rr379537	regulatory region 379537	within coordinates
Rr631677	regulatory region 631677	473 bp distal