rs49459135 SNP Detail

Summary

• ID
  rs49459135
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90519664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTGAAG AGTGACTTCA
  GGATGCTAAT CCCTCCCCAC ACCCTACCAA CTTCCTCTTC TCAAGACTCC TCCCCATTAC
  CCCCCCCCAC CCCAGGAGAA AATGTTCAAA ACTTTTCACT TGAGATGAGT AACTGAGAAT
  GCTCGCTGGG CTTGGCTCTA CTATGTGCAC ATTCATGCAT AAGCTGCTCT AAGGATGAAA
  W
  TCCAGGCAGT GAGTGGGAGG AGGCGAGTGA TGTTGCTAGA AATTTATGGT TGGTGGGGGA
  TGCTGTTTAA AATCTTTTAG ACTGTGTTCT TTCCCCATGC CCCCTTTGAT ACAAGGCTCA
  AAATTCTACC TTTTGGGATC AACGTCTTTA GCTATATATC AAGATTTAGA CCAGTGGTTC
  TCAACCTGTG GGTTGAGACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424279	NES15923540	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49459135					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424279	NES15923540	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90519664 () rs orientation: forward

Symbol	Name	Function Class
Gm57853	predicted gene, 57853	827 bp upstream
Rr580416	regulatory region 580416	within coordinates
Rr580417	regulatory region 580417	320 bp proximal
Rr580418	regulatory region 580418	431 bp proximal
S100a5	S100 calcium binding protein A5	577 bp downstream
S100a6	S100 calcium binding protein A6 (calcyclin)	525 bp upstream
Tssr30242	transcription start site region 30242	61 bp downstream
Tssr30243	transcription start site region 30243	475 bp upstream
Tssr30244	transcription start site region 30244	512 bp upstream
Tssr30245	transcription start site region 30245	543 bp upstream
Tssr30246	transcription start site region 30246	789 bp upstream
Tssr30247	transcription start site region 30247	819 bp upstream
Tssr30248	transcription start site region 30248	925 bp upstream
Tssr30249	transcription start site region 30249	1162 bp upstream
Tssr30250	transcription start site region 30250	1371 bp upstream
Tssr30251	transcription start site region 30251	1418 bp upstream
Tssr30252	transcription start site region 30252	1989 bp upstream