rs49452734 SNP Detail

Summary

• ID
  rs49452734
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95764300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AATTTATAGC CACTATGCCT CAAGATCTCC GTGCCAAGAT
  CCAGGTCAGA AATTGTATAT CTCAGCCTCC AGATTAGGAT CACAGGTGAG CCTTCCAATT
  Y
  TGAATTGTAG TTCATTCCAA ATATAGTCAA GTAGATAACC AGGAATAGCC ACCACACGCT
  TAGTGCTTAT ACTTACAGTA ACACTCATAC AATTAAGTAC T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135513104	ENSMUSSNP288989	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49452734					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95764300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13522	CpG island 13522	868 bp distal
Gm26594	predicted gene, 26594	within coordinates
Prpf3	pre-mRNA processing factor 3	1103 bp upstream
Rr397843	regulatory region 397843	990 bp downstream
Rr581050	regulatory region 581050	1246 bp distal
Rr581051	regulatory region 581051	1012 bp distal
Rr581052	regulatory region 581052	444 bp distal
Rr581053	regulatory region 581053	1615 bp proximal
Tssr34550	transcription start site region 34550	1166 bp upstream
Tssr34551	transcription start site region 34551	1099 bp upstream