rs49448994 SNP Detail

Summary

• ID
  rs49448994
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:78795959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGT CCTCATTGTC CCTTTCTCTC
  C
  CCTGCCATCC TCCCTCCCTT GTCCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325025958	CHEV_15_78742189	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49448994					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78795959 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700027A07Rik	RIKEN cDNA 1700027A07 gene			204 bp downstream
Cpgi7305	CpG island 7305			1553 bp proximal
Gm49510	predicted gene, 49510			Intron
Rr404490	regulatory region 404490			1882 bp upstream
Rr505452	regulatory region 505452			337 bp proximal
Rr505453	regulatory region 505453			472 bp proximal
Rr505454	regulatory region 505454			1670 bp proximal
Sh3bp1	SH3-domain binding protein 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr132010	transcription start site region 132010			243 bp downstream