rs49403645 SNP Detail

Summary

• ID
  rs49403645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84208434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCGAGGG AGGCCTGTCC
  ATCAGCCACC TGTGCAAGCG GAGTGGGGGA AGTGCGGTAA GTGCTATTCC ACGCTGCCTC
  CCTCTCCAGG TTCTGGGCCC CCAACAGAGG CTAGGAGTGG CTGGCTGCCA GGCCCTCCAT
  ACTTAAAGGC CTGGAAAAAC CAGCCAGTGC CTAAGGTCTC CATGCCAGGA GGGAGGATTA
  Y
  GGAGCTGGGG TGCAGATGGT GGGAACCAGC CTTCACGGTC CACCTCTGCA CAGTGGCTTT
  CCTGCTGGAT GGTCCCCAGA CCTCCCAGAT CTAAGGCCCT CCCTGGCCAC CTTCATATCT
  CCCTTAACAG TGCTGTTGGA TTGGGGGCCA GCTTTATGCT TCCATGATCC TCAGCTTCTT
  CCTAAAGGGA CCCTGAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904833	NES15950967	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49403645					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904833	NES15950967	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84208434 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Rr633014	regulatory region 633014	991 bp distal
Rr633015	regulatory region 633015	277 bp distal
Rr633016	regulatory region 633016	within coordinates