rs49387380 SNP Detail

Summary

• ID
  rs49387380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123180672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAATAA ATAAATAAAT
  AAATGCAAGC AAACATAGCG GTAGTTACGT AGTGAAACCC TGTCATTCAT AAACACACAA
  ACAGAGCGGG CAGCGCTAGG CTATGTAATG AAACCCTGTC ATTCATTCAT TCATTCATAT
  AAATAAATAA ATAAATAAAT AAATAAATAA ATAAATGCAA GCAAACAGCG GTAGTTACGT
  R
  GTGAAACCCT GTCATTCATA ACAACACACA AACAGAGCGG GCAGCGGTAG CGAATGCCTT
  TAATTCCAGC ACCCGAGAGA CAGAGGCCGG CAGTTCTCTG AGTTCGAGGC CAGCCTGGTC
  TACAGAGCAA ATTTCAGGGC AGCCAGACCT ACACAGAGAA ACCCCATCTC AAAAACAACA
  ATCAAGCAAA AATTCCTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135764383	ENSMUSSNP6712915	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49387380					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123180672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	955 bp distal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	1033 bp upstream
Rr397990	regulatory region 397990	970 bp downstream
Rr584510	regulatory region 584510	1103 bp distal
Rr584511	regulatory region 584511	425 bp distal
Tssr35499	transcription start site region 35499	1351 bp upstream
Tssr35500	transcription start site region 35500	1030 bp upstream
Tssr35501	transcription start site region 35501	1013 bp upstream