rs49376910 SNP Detail

Summary

• ID
  rs49376910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138920061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAC GCCCACTCGA CCACAGGGCC
  Y
  GCCCCCGTCC CCGCCCCCCG CGCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147667629	ENSMUSSNP197478	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49376910					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138920061 () rs orientation: forward

Symbol	Name	Function Class
9530077C14Rik	RIKEN cDNA 9530077C14 gene	within coordinates
Capzb	capping actin protein of muscle Z-line subunit beta	149 bp upstream
Cpgi15162	CpG island 15162	within coordinates
Rr377279	regulatory region 377279	within coordinates
Rr603133	regulatory region 603133	44 bp distal
Rr603134	regulatory region 603134	within coordinates
Rr603135	regulatory region 603135	185 bp proximal
Rr603136	regulatory region 603136	347 bp proximal
Tssr39900	transcription start site region 39900	167 bp upstream
Tssr39901	transcription start site region 39901	192 bp upstream
Tssr39902	transcription start site region 39902	216 bp upstream
Tssr39903	transcription start site region 39903	484 bp upstream
Tssr39904	transcription start site region 39904	529 bp upstream
Tssr39905	transcription start site region 39905	559 bp upstream
Tssr39906	transcription start site region 39906	1336 bp upstream
Tssr44214	transcription start site region 44214	282 bp upstream
Tssr44215	transcription start site region 44215	113 bp upstream
Tssr44216	transcription start site region 44216	92 bp upstream
Tssr44217	transcription start site region 44217	32 bp upstream
Tssr44218	transcription start site region 44218	1246 bp downstream