rs49360302 SNP Detail

Summary

• ID
  rs49360302
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135638995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cttgtataa atgcttgaac tttgtgttgg
  gataTGGCTG CCTCAGGGAA TAGCTTTTCT GAGCTGAAGA TGAGTTCGCT CAGTCTCGGG
  TTAGGGTCAT CCTGCTGAGG TACCTCCTCC TTCCCTGCTC ATGGGTGACT CACAGATTTC
  M
  GTTCCTGCTG CTGAGTACAG ACAGACTCTG CCCCAGCTCT GCTTTGGCAC ACGTGGTCCC
  GTGTTTTCTT CTCCAGCCTC TGAGAGGGCT CTTCCTGCGA GCATGCAGGG TCACACCCTT
  AACTTTGCAA GCAGTGCCTC TGGAGATCTG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60804037	NES16474641	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	C	C	C	A	C	A		C	C	A	C		C
ss145543576	ENSMUSSNP5458023	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
ss319992570	CHEV_1_137607834	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49360302					SNP	A	A	C	A	C	C	C	C	A	C	A	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60804037	NES16474641	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135638995 () rs orientation: forward

Symbol	Name	Function Class
Gm57161	predicted gene, 57161	119 bp downstream
Rr419242	regulatory region 419242	within coordinates
Tssr8966	transcription start site region 8966	115 bp upstream