rs49357410 SNP Detail

Summary

• ID
  rs49357410
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83843618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCAGAAG AGTGAATCAG
  ATCCCATTAC AGATAGTTGT GAGCCACCCT GTGTTGTTGG GAATTGAACT CAGGACCTCT
  GGTAGAGGGG TCAGTGCTCT TAACTGCTGA ACCATCTCTT CAGCCCGGGA AAGCTCTGTT
  CTGACTCATG ATTTCAACTT TCTGACCATG TCCACTTGCT CTGGTGGCCT TTGCGTCTGT
  R
  GGGAGACAGG CTGCTATGGC TGAAGCAGTT CACCTCATTG CAACTCTAAA GCAAAGGCAG
  AAAGGAGCCT GCATACCTTC GGAGGATGAG GCACTAATGA CTTCCATCTC CAAGTGTGCA
  CTATTTGGGA AAGTTTCTAA CACGACTAGC TGTATGTAAC ACAGAGCTTT AGAGAGACAT
  TTATGATCTT AAACCATACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60905758	NES15947020	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49357410					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905758	NES15947020	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83843618 () rs orientation: forward

Symbol	Name	Function Class
Rr632959	regulatory region 632959	within coordinates
Tssr57384	transcription start site region 57384	467 bp upstream
Tssr57385	transcription start site region 57385	496 bp upstream
Tssr57386	transcription start site region 57386	781 bp upstream
Zfp638	zinc finger protein 638	432 bp upstream