rs49343117 SNP Detail

Summary

• ID
  rs49343117
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118942538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGGAGGCA GAGGCAGGCG GATTTCTGAG TTCGAGGCCA
  GCCTGGTCTA CAAAGTGAGT CCAGACAGCC AAGGCTACAC AGAGAAACCC TGTCTCGAAA
  M
  CAAAAAAAAA AAAAAAAAAA AAAAAAAAAG AGTTCAAGGA GTATGAGATC TTGTCTGAAA
  ACACCTAGAT GTATAACAAG AAACATACGA AGTTCCTGG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320473762	CHEV_2_118937793	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49343117					SNP	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss147323346	ENSMUSSNP2168504	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118942538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12105	CpG island 12105	322 bp proximal
Gm57476	predicted gene, 57476	93 bp downstream
Rad51	RAD51 recombinase	757 bp upstream
Rr563414	regulatory region 563414	507 bp distal
Rr563415	regulatory region 563415	316 bp distal
Rr563416	regulatory region 563416	260 bp proximal
Rr563417	regulatory region 563417	763 bp proximal
Tssr19603	transcription start site region 19603	752 bp upstream
Tssr25799	transcription start site region 25799	691 bp downstream